BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB028C03LP1|AL428866
(888 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1638 763 0.0
3x_Contig787 624 e-179
>3x_Contig1638
Length = 14042
Score = 763 bits (385), Expect = 0.0
Identities = 395/397 (99%), Gaps = 1/397 (0%)
Strand = Plus / Minus
Query: 1 atccttcctatcaggtcttttctttaccgcatatgctatgggtttcatctttgccatcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 atccttcctatcaggtcttttctttaccgcatatgctatgggtttcatctttgccatcat 349
Query: 61 cttttacagagctttcttgaacgttaacggtgaaaactactggaaggttcaattctggtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 cttttacagagctttcttgaacgttaacggtgaaaactactggaaggttcaattctggtt 289
Query: 121 ctctatctggttaccagctgtgttgatcttatggagattggtttggcctgagactaaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ctctatctggttaccagctgtgttgatcttatggagattggtttggcctgagactaaata 229
Query: 181 tttcactaaggtgttaaaggctagacaattgatgagagacgatgccattgccaagaacgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 tttcactaaggtgttaaaggctagacaattgatgagagacgatgccattgccaagaacgg 169
Query: 241 tggtcaaccattgccaaaattgtctttcaaacaaaaattcgctaacgttaagaaaactgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 tggtcaaccattgccaaaattgtctttcaaacaaaaattcgctaacgttaagaaaactgt 109
Query: 301 ttctaaatactggttattgttcggttacttgattctcttgcttgttggtccaaactactt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 ttctaaatactggttattgttcggttacttgattctcttgcttgttggtccaaactactt 49
Query: 361 gacccatgcctctcaagatttgttcccaaccatgtta 397
||||||||| |||||||||||| ||||||||||||||
Sbjct: 48 gacccatgcttctcaagatttg-tcccaaccatgtta 13
>3x_Contig787
Length = 1880
Score = 624 bits (315), Expect = e-179
Identities = 324/327 (99%)
Strand = Plus / Plus
Query: 562 agctttcatgttgaagacaagttctgctgtgttgggtgcagggttcatgctttggttctc 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agctttcatgttgaagacaagttctgctgtgttgggtgcagggttcatgctttggttctc 60
Query: 622 cattcttggtgtctggggtgttcttccaatccatctttccgaattatctcctccagaagc 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cattcttggtgtctggggtgttcttccaatccatctttccgaattatctcctccagaagc 120
Query: 682 tagagctttggtctctggtcttgcctatcaattaggtaacttggcttctgccgcttcggt 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tagagctttggtctctggtcttgcctatcaattaggtaacttggcttctgccgcttcggt 180
Query: 742 cgttatcgaaaacgatttggctgatttgtacccaatcgaatggaactccgcagtgaaagt 801
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 181 cgttatcgaaaacgatttggctgatttgtacccaatcgaatggaactccgcaggtgaagt 240
Query: 802 aacaaacaaggattactctaaagttatggctatcttgactggttccagtgtcatcttcac 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aacaaacaaggattactctaaagttatggctatcttgactggttccagtgtcatcttcac 300
Query: 862 ttttgtcttggtatttgtcggtcacga 888
|||||||||||||||||||||||||||
Sbjct: 301 ttttgtcttggtatttgtcggtcacga 327
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6461
Number of Sequences: 1807
Number of extensions: 6461
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 2
length of query: 888
length of database: 10,358,551
effective HSP length: 16
effective length of query: 872
effective length of database: 10,329,639
effective search space: 9007445208
effective search space used: 9007445208
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)